species:   Opsin
pid:       PID1919
parent:    n_os_milR_34
paralog:   
locus:     JAAVMX010000003.1:14857696-14857973
matures:   ['UUGCUCUCGAGCUUUGGU', 'CCAGGUUGGGAGGAAUU']
srr:       SRR12952903
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952903.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952903.cram JAAVMX010000003.1:14857696-14857973

3882 out of bounds
8463 alignments
331 proper strand
157 stranded perfect matches

     ********************                                                                                                                                                                                                                                     *******************     
CGUUCAAUUGCUCUCGAGCUUUGGUCACAAGGCAGGCCGAUCAAUAAGAUUCUAAAGAGGGCUGGGAUUAGGGGAUGGGAUGCAAGGUAAUAGCACCCACACCACUCCCGAGGCUUCAAAAAACCGGAUAAAGAAGGCAGGCGGCAACGGCUAUAAAGAGGGCACAGCCCCACCGAUGCUCUCUGACAAAGACCAAGAGGCUCUUUAUGACGAGAUUGAGGCAUAUUUAGCAGGGCCAACGGACUGUUUAAAUGACCCAGGUUGGGAGGAAUUAGACG
((((.((((.(((((((.((..(((((..((((((.((((((.....)))......((((.((((((....((..((((.(((.........)))))))..))..)))).)).))))......((..........))((((.((((.(((.........((((...))))..))).)))).)))).............((((((.((((.(........).))))......))))))..))).))))))...))))).)).))))))).)))).))))
-------UUGCUCUCGAGCUUUGGU------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=18 a=0 c
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGUUGGGAGGAAUU----- l=17 a=0 c*
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGCAGGGCCAACGGACUGUU------------------------------ l=23 a=27 ma
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGGUUGGGAGGAAUU----- l=17 a=0 ma*

------AUUGCUCUCGAGCUUUGGUCACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
-------UUGCUCUCGAGCUUUGGUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=19 a=1 
-------UUGCUCUCGAGCUUUGGcCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=2 
-------UUGCUCUCGAGCUUUGGUCACAAGu------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=25 a=1 
--------UGCUCUCGAGCUUUGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=16 a=1 
--------UGCUCUCGAGCUUUGGUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=18 a=3 
--------UGCUCUCGAGCUUUGGUCACAAGa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=24 a=1 
-------------UCGAGCUUUGGUCACAAGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=1 
-------------UCGAGCUUUGGUCACAAGGCAGGu------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 
-------------------UUUGGUCgCAAGGCAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=17 a=1 
-------------------UUUGGUCACAAGGCAGGCaGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
-------------------UUUGGUCACAAGGCAGGCCGAUC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
-------------------UUUGGUCACAAGGCAGGCCGAUa-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
-------------------UUUGGUCACAAGGCAGGCaGAUC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
------------------------UCACAAGGCAGGCCGAUC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=18 a=1 
----------------------------AAGGCAGGCCGAUCAAUAAGAUUCU--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=25 a=1 
--------------------------------CAGGCCGAUCAAUAAGgUUCUAAAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=27 a=1 
----------------------------------------UCAAUAAGAUUCUAAAGAGGu------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
----------------------------------------UCAAUAAGAUUCUAAAGAGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
----------------------------------------UCAAUAAGAUUCUAAAGAGGGu------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=22 a=1 
------------------------------------------AAUAAGAUUCUAAAGAGGGCU----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
------------------------------------------AAUAAGAUUCUAAAGAGGGCUGu--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=3 
------------------------------------------AAUAAGAUUCUAAAGAGGGCUGGGu------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=25 a=1 
--------------------------------------------UAAGAUUCUAAAGAGGGCUG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=1 
--------------------------------------------UAAGAUUCUAAAGAGGGCUa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=2 
--------------------------------------------UAAGAUUCUAAAGAGGGCUGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=1 
--------------------------------------------UAAGAUUCUAAAGAGGGCUGGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=3 
--------------------------------------------UAAGAUUCUAAAGAGGGCUGGGAUU----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=25 a=1 
--------------------------------------------UAAGAUUCUAAAGAGGGCUGGGAUUAGu-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=28 a=1 
----------------------------------------------AGAUUCUAAAGAGGGCUGGGAgU----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=2 
----------------------------------------------AGAUUCUAAAGAGGGCUGGGAUU----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
----------------------------------------------AGAUUCUAAAGAGGGCUGGGAUa----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
----------------------------------------------AGAUUCUAAAGAGGGCUGGGAUUAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=26 a=1 
------------------------------------------------AUUCUAAAGAGGGCUGGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=19 a=1 
------------------------------------------------AUUCUAAAGAGGGCUGGGAcU----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
------------------------------------------------AUUCUAAAGAGGGCUGGGAUUAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=2 
------------------------------------------------AUUCUAAAGAGGGCUGGGAUUAGa-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 
-------------------------------------------------UUCUAAAGAGGGCUGGGAUc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=2 
-------------------------------------------------UUCUAAAGAGGGCUGGGAUU----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=2 
-------------------------------------------------UUCUAAAGAGGGCUGGGAUUAGa-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
-------------------------------------------------UUCUAAAGAGGGCUGGGAUUAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=2 
----------------------------------------------------UAAAGAGGGCUGGGAUUAGGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=22 a=1 
---------------------------------------------------------AGGGCUGGGAUUAGGGGAUGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
--------------------------------------------------------------------UAGGGGAUGGGAUGCAAGGU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=1 
--------------------------------------------------------------------------------UGCAAGGUAAUAGCACCCcCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
--------------------------------------------------------------------------------UGCAAGGUAAUAGCACCCACACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
-----------------------------------------------------------------------------------AAGGUAAUAGCACCCACACCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=1 
-----------------------------------------------------------------------------------AAGGUAAUAGCACCCACACCACU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
------------------------------------------------------------------------------------------UAGCACCCACACCACU---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=16 a=1 
------------------------------------------------------------------------------------------UAGCACCCACACCACUCCCGu----------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
------------------------------------------------------------------------------------------UAGCACCCACACCACUCCCGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=2 
------------------------------------------------------------------------------------------UAGCACCCACACCACUCCCGAGGu-------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=2 
------------------------------------------------------------------------------------------------------CACUCCCGAGGCgUC----------------------------------------------------------------------------------------------------------------------------------------------------------------- l=15 a=2 
------------------------------------------------------------------------------------------------------------CGAGGCUUCAAAAAACCGGAUA---------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=1 
-----------------------------------------------------------------------------------------------------------------CUUCAAAAAcCCGGAUAAAGAAGG--------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=4 
-----------------------------------------------------------------------------------------------------------------CUUCAAAAAcCCGGAUAAAGAAGGC-------------------------------------------------------------------------------------------------------------------------------------------- l=25 a=1 
------------------------------------------------------------------------------------------------------------------UUCAAAAAcCCGGAUAAAGAAGG--------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=6 
-------------------------------------------------------------------------------------------------------------------UCAAAAAcCCGGAUAAAGAAG---------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=2 
-------------------------------------------------------------------------------------------------------------------UCAAAAAcCCGGAUAAAGAAGG--------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=2 
-------------------------------------------------------------------------------------------------------------------UCAAAAAACCGGAUAAAGAAGGu-------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
-------------------------------------------------------------------------------------------------------------------UCAAAAAcCCGGAUAAAGAAGGC-------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=4 
---------------------------------------------------------------------------------------------------------------------AAAAAcCCGGAUAAAGAAGGCAGG----------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 
----------------------------------------------------------------------------------------------------------------------AAAAACCGGgUAAAGAAGGCAG------------------------------------------------------------------------------------------------------------------------------------------ l=22 a=2 
----------------------------------------------------------------------------------------------------------------------AAAAcCCGGAUAAAGAAGGCAGG----------------------------------------------------------------------------------------------------------------------------------------- l=23 a=9 
----------------------------------------------------------------------------------------------------------------------AAAAcCCGGAUAAAGAAGGCAGGC---------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 
-----------------------------------------------------------------------------------------------------------------------AAAcCCGGAUAAAGAAGGCAGGCGG-------------------------------------------------------------------------------------------------------------------------------------- l=25 a=2 
------------------------------------------------------------------------------------------------------------------------AAcCCGGAUAAAGAAGGCAGG----------------------------------------------------------------------------------------------------------------------------------------- l=21 a=2 
------------------------------------------------------------------------------------------------------------------------AAcCCGGAUAAAGAAGGCAGGCGG-------------------------------------------------------------------------------------------------------------------------------------- l=24 a=2 
--------------------------------------------------------------------------------------------------------------------------------UAAAGAAGGCAGGCGGCAACGGCU------------------------------------------------------------------------------------------------------------------------------ l=24 a=1 
--------------------------------------------------------------------------------------------------------------------------------UAAAGAAGGCAGGCGGCAACGGCa------------------------------------------------------------------------------------------------------------------------------ l=24 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------CGGCAACGGCUAUAAAGAGGGC------------------------------------------------------------------------------------------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------AACGGCUAUAAAGAGGGCACAGg-------------------------------------------------------------------------------------------------------------- l=23 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------AACGGCUAUAAAGAGGGCACAGu-------------------------------------------------------------------------------------------------------------- l=23 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------AACGGCUAUAAAGAGGGCACAGC-------------------------------------------------------------------------------------------------------------- l=23 a=5 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCCACCGgUGCUCUCUGACAAAG--------------------------------------------------------------------------------------- l=26 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCGgUGCUCUCUGACAAAGACC------------------------------------------------------------------------------------ l=25 a=3 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCGgUGCUCUCUGACAAAGACC------------------------------------------------------------------------------------ l=24 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGgUGCUCUCUGACAAAGACC------------------------------------------------------------------------------------ l=23 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGgUGCUCUCUGACAAAGACCA----------------------------------------------------------------------------------- l=24 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGgUGCUCUCUGACAAAGACCAAG--------------------------------------------------------------------------------- l=26 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGgUGCUCUCUGACAAAGACC------------------------------------------------------------------------------------ l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGgUGCUCUCUGACAAAGACCAA---------------------------------------------------------------------------------- l=23 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCUCUCUGACAAAGACCAAG--------------------------------------------------------------------------------- l=21 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCUCUCUGACAAAGACCAAGA-------------------------------------------------------------------------------- l=22 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCUCUCUGuCAAAGACCAAGAGGC----------------------------------------------------------------------------- l=25 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCUCUCUGACAAAGACCAAGAGGC----------------------------------------------------------------------------- l=25 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCUCUCUGACAAAGACCAAGAGGu----------------------------------------------------------------------------- l=25 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CUCUCUGACAAAGACa------------------------------------------------------------------------------------ l=16 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUCUGACAAAGACCAAGAGGu----------------------------------------------------------------------------- l=22 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUCUGACAAAGACCAAGAGGg----------------------------------------------------------------------------- l=22 a=2 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CUCUGACAAAGACCAAGAGGCUCUUU------------------------------------------------------------------------ l=26 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGACAAAGACCAAGAGGu----------------------------------------------------------------------------- l=20 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGACAAAGACCAAGAGGCU---------------------------------------------------------------------------- l=21 a=3 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGACAAAGACCAAGAGGCUg--------------------------------------------------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGACAAAGACCAAGAGGCUC--------------------------------------------------------------------------- l=22 a=3 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCcGACAAAGACCAAGAGGCUC--------------------------------------------------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGACAAAGACCAAGAGGCUCU-------------------------------------------------------------------------- l=23 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGACAAAGACCAAGAGGCUCUU------------------------------------------------------------------------- l=24 a=2 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGACAAAGACCAAGAGGCUCUg------------------------------------------------------------------------- l=24 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGACAAAGACCAAGA-------------------------------------------------------------------------------- l=15 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGACAAAGACCAAGAGGCUCc-------------------------------------------------------------------------- l=21 a=3 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGACAAAGACCAAGAGGCUCUa------------------------------------------------------------------------- l=22 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGACAAAGACCAAGAGGCUCgU------------------------------------------------------------------------- l=22 a=2 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGACAAAGACCAAGAGGCUCUUa------------------------------------------------------------------------ l=23 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACCAAGAGGCUCUUUAUGACGu----------------------------------------------------------------- l=25 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCAAGAGGCUCUUUAUGACGAu---------------------------------------------------------------- l=25 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGGCUCUUUAUGACGAGA--------------------------------------------------------------- l=21 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGGCUCUUUAUGACGAGAUa------------------------------------------------------------- l=23 a=2 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUUUAUGACGAGAUUGAGGC-------------------------------------------------------- l=21 a=3 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAUGACGAGAUUaAGGCAUAUU--------------------------------------------------- l=24 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUGACGAGAUUaAGGCAUAUUUAGC----------------------------------------------- l=26 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGACGAGAUUGAGGCAUAUUUAGC----------------------------------------------- l=24 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGACGAGAUUaAGGCAUAUUUAGC----------------------------------------------- l=24 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUaAGGCAUAUUUAGCAGGGC------------------------------------------ l=21 a=4 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUaAGGCAUAUUUAGCAGGGCCAACG------------------------------------- l=26 a=1 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UaAGGCAUAUUUAGCAGGGCCAACG------------------------------------- l=25 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUAUUUAGCAGGGCCAACGGAC---------------------------------- l=23 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUAUUUAGCAGGGCuAACGGACU--------------------------------- l=24 a=3 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUAUUUAGCAGGGCCAACGGACc--------------------------------- l=24 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUAUUUAGCAGGGCCAACGGACa--------------------------------- l=24 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUAUUUAGCAGGGCCAACGGACU--------------------------------- l=24 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUUUAGCAGGGCCAACGGAC---------------------------------- l=21 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUUUAGCAGGGCCAACGGACU--------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUUUAGCAGGGCCAACGGACc--------------------------------- l=22 a=2 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUUUAGCAGGGCCAACGGACg--------------------------------- l=22 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUUUAGCAGGGCCAACGGACUGUU------------------------------ l=25 a=2 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUUUAGCAGGGCuAACGGACUGUUU----------------------------- l=26 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGCAGGGCCAACGGACUG-------------------------------- l=21 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGCAGGGCCAACGGACUGU------------------------------- l=22 a=2 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGCAGGGCCAACGGACUGc------------------------------- l=22 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGCAGGGCCAACGGACUGUc------------------------------ l=23 a=6 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGCAGGGCCAACGGACUGgU------------------------------ l=23 a=4 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGCAGGGCCAACGGACUGUU------------------------------ l=23 a=27 (ma)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGCAGGGCuAACGGACUGUU------------------------------ l=23 a=7 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGuAGGGCCAACGGACUGUU------------------------------ l=23 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGCAGGGCCAACGGACUGUg------------------------------ l=23 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAGCAGGGCCAACGGACUGUUU----------------------------- l=24 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAGCAGGGCCAACGGACUG-------------------------------- l=20 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAGCAGGGCCAACGGACUGUU------------------------------ l=22 a=2 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAGCAGGGCCAACGGACUGgU------------------------------ l=22 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAGCAGGGCCAACGGACUGUgU----------------------------- l=23 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAGCAGGGCCAACGGgCUGUUU----------------------------- l=23 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAGCAGGGCCAACGGACUGUc------------------------------ l=21 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAGCAGGGCCAACGGACUGUU------------------------------ l=21 a=4 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAGCAGGGCCAACGGACUGUa------------------------------ l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAGCAGGGCCAACGGACUGUUUAAAUGACC--------------------- l=30 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCCAACGGACUGUUUAAAUGAC---------------------- l=25 a=7 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCCAACGGACUGUUUAAAUGACC--------------------- l=26 a=3 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCCAACGGACUGUUUAAAUGACu--------------------- l=26 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCCAACGGACUGUUUAAAUGACa--------------------- l=26 a=1 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACGGACUGUUUAAAUGACC--------------------- l=23 a=1 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCuAACGGACUGUUUAAAUGACC--------------------- l=23 a=2 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACGGACUGUUUAAAUGACu--------------------- l=23 a=3 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACGGACUGUUUAAAUGACCCAu------------------ l=26 a=1 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACGGACUGUUUAAAUGACCCAGG----------------- l=27 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAaGGACUGUUUA---------------------------- l=14 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGGACUGUUUAAAUGACCCAGGUU--------------- l=27 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGGACUGUUUAAAUGACC--------------------- l=20 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGGACUGUUUAAAUGACCCAGG----------------- l=24 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGACUGUUUAAAUGACCCc------------------- l=21 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGACUGUUUAAAUGACCCAGG----------------- l=23 a=6 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGACUGUUUAAAUGACCCAGu----------------- l=23 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGACUGUUUAAAUGACCCAGGU---------------- l=24 a=20 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGACUGUUUAAAUGACCCAGGc---------------- l=24 a=5 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACUGUUUAAAUGACCCAG------------------ l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACUGUUUAAAUGACCCAGa----------------- l=22 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACUGUUUAAAUGACCCAGu----------------- l=22 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACUGUUUAAAUGACCCAGc----------------- l=22 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACUGUUUAAAUGACCCAGGc---------------- l=23 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACUGUUUAAAUGACCCAGGU---------------- l=23 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACUGUUUAAAUGACCCAGGa---------------- l=23 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAAAUGACCCAGGUUGGGAGGAAUUAGACG l=31 a=2 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAUGACCCAGGUUGGGAGGAAUU----- l=24 a=1 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGACCCAGGUUGGGAGGAAUUAGAC- l=25 a=3 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGACCCAGGUUGGGAGGAAUUAGAa- l=25 a=1 

mb-00011
ax-1011011
ku-01
ss-101111011100
fn-101
